sasa 0

Query

import mdtraj as md
import numpy as np

def protein_surface_area(pdb_file):
  """
  1. This function loads a pdb
  2. Calculates the Solvent Accessible Surface Area (sasa) per residue
  3. Returns it
  """
  [insert]
  return sasa

Output

import mdtraj as md
import numpy as np

def protein_surface_area(pdb_file):
  """
  1. This function loads a pdb
  2. Calculates the Solvent Accessible Surface Area (sasa) per residue
  3. Returns it
  """
  traj = md.load(pdb_file)
  sasa = md.shrake_rupley(traj)
  return sasa

Evaluate

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