sasa 1

Query

import mdtraj as md
import numpy as np

def protein_surface_area(pdb_file):
  """
  1. This function loads a pdb
  2. Calculates the Solvent Accessible Surface Area (sasa) per residue
  3. Returns it
  """
  [insert]
  return sasa

Output

import mdtraj as md
import numpy as np

def protein_surface_area(pdb_file):
  """
  1. This function loads a pdb
  2. Calculates the Solvent Accessible Surface Area (sasa) per residue
  3. Returns it
  """
  traj = md.load(pdb_file)
  sasa = md.shrake_rupley(traj, mode='residue')
  sasa = np.array(sasa)
  return sasa

Evaluate

Go to Google Form